MBG4057 Special Topics in BioinformaticsBahçeşehir UniversityDegree Programs PERFORMING ARTSGeneral Information For StudentsDiploma SupplementErasmus Policy StatementNational QualificationsBologna Commission
PERFORMING ARTS
Bachelor TR-NQF-HE: Level 6 QF-EHEA: First Cycle EQF-LLL: Level 6

Course Introduction and Application Information

Course Code Course Name Semester Theoretical Practical Credit ECTS
MBG4057 Special Topics in Bioinformatics Spring
Fall
3 0 3 6
This catalog is for information purposes. Course status is determined by the relevant department at the beginning of semester.

Basic information

Language of instruction: English
Type of course: Non-Departmental Elective
Course Level: Bachelor’s Degree (First Cycle)
Mode of Delivery: Face to face
Course Coordinator : Dr. Öğr. Üyesi ELIZABETH HEMOND
Course Objectives: This course aims to discuss technical papers from the recent bioinformatics literature, examine their algorithms and conduct an intensive study on a specific bioinformatics problem.

Learning Outcomes

The students who have succeeded in this course;
1. Define the open research questions in bioinformatics.
2. Discuss current solutions to tackle bioinformatics problems.
3. Develop an ability to discuss open research issues in computational biology.
4. Acquire an understanding of existing bioinformatics solutions for genomics.
5. Acquire an understanding of existing bioinformatics solutions for proteomics.
6. Develop an ability to focus on several bioinformatics articles and present their findings.
7. Obtain a familiarity with emerging topics in bioinformatics.
8. Obtain a familiarity with emerging topics in computational biology.
9. Develop an ability to find, read and discuss scientific articles published in the bioinformatics field.

Course Content

This discussion-based bioinformatics course will expose students to the latest developments in bioinformatics analyses and algorithms.

Weekly Detailed Course Contents

Week Subject Related Preparation
1) Genomics (genome sequencing, storage and study of genome information, genome databases)
2) Genomics (polymorphism in the human genome and association with diseases)
3) Comparative genomics (genome subtraction method, whole-genome alignment methods, genome-context methods, gene-fusion method)
4) Structural genomics (the scientific program of structural genomics, target selection in structural genomics)
5) Functional genomics (integration of experimental and computational methods)
6) Functional genomics (gene-expression data and DNA micro-arrays)
7) Functional genomics (regulatory networks, protein-protein interaction networks)
8) Proteomics, Protein folding and fold recognition
9) Epigenomics
10) Cancer informatics
11) Non-coding RNA identification and search
12) Emerging topics in bioinformatics
13) Emerging topics in computational biology
14) Presentations

Sources

Course Notes / Textbooks: Haftalık ders notları iletilecektir.
Course notes will be supplied.
References: Articles from the primary literature (scientific journals, e.g. Nature Reviews Genetics, Nature, Science, Genome Research, Nature Genetics, Nature Methods, Bioinformatics, Molecular Systems Biology etc.)

Evaluation System

Semester Requirements Number of Activities Level of Contribution
Homework Assignments 2 % 15
Project 1 % 25
Midterms 1 % 10
Final 1 % 50
Total % 100
PERCENTAGE OF SEMESTER WORK % 25
PERCENTAGE OF FINAL WORK % 75
Total % 100

ECTS / Workload Table

Activities Number of Activities Duration (Hours) Workload
Course Hours 14 3 42
Study Hours Out of Class 14 8 112
Midterms 1 2 2
Final 1 2 2
Total Workload 158

Contribution of Learning Outcomes to Programme Outcomes

No Effect 1 Lowest 2 Low 3 Average 4 High 5 Highest
           
Program Outcomes Level of Contribution
1) They acquire theoretical, historical and aesthetic knowledge specific to their field by using methods and techniques related to performing arts (acting, dance, music, etc.). 2
2) They have knowledge about art culture and aesthetics and they provide the unity of theory and practice in their field. 2
3) They are aware of national and international values in performing arts. 2
4) Abstract and concrete concepts of performing arts; can transform it into creative thinking, innovative and original works. 1
5) They have the sensitivity to run a business successfully in their field. 3
6) Develops the ability to perceive, think, design and implement multidimensional from local to universal. 3
7) They have knowledge about the disciplines that the performing arts field is related to and can evaluate the interaction of the sub-disciplines within their field. 2
8) They develop the ability to perceive, design, and apply multidimensionality by having knowledge about artistic criticism methods. 3
9) They can share original works related to their field with the society and evaluate their results and question their own work by using critical methods. 1
10) They follow English language resources related to their field and can communicate with foreign colleagues in their field. 1
11) By becoming aware of national and international values in the field of performing arts, they can transform abstract and concrete concepts into creative thinking, innovative and original works. 3
12) They can produce original works within the framework of an interdisciplinary understanding of art. 2
13) Within the framework of the Performing Arts Program and the units within it, they become individuals who are equipped to take part in the universal platform in their field. 3
14) Within the Performing Arts Program, according to the field of study; have competent technical knowledge in the field of acting and musical theater. 2
15) They use information and communication technologies together with computer software that is at least at the Advanced Level of the European Computer Use License as required by the field. 3