Week |
Subject |
Related Preparation |
1) |
Review |
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1) |
Introduction: Molecular Biology and Computer Science a) The organization of DNA, proteins, cell. b) In silico biology |
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2) |
Pairwise alignment of biomolecular sequences and search for similarities: Global alignment of two sequences. |
|
3) |
Local alignment, Semi-global alignment. |
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4) |
Scoring similarity matrices: BLOSSUM |
|
5) |
PAM similarity matrices |
|
6) |
Multiple sequence alignment
a) Iterative Methods
b) Structure Based Methods
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|
7) |
Scoring multiple alignments |
|
8) |
Bioinformatics approaches to gene expression, detecting differential expression |
|
9) |
Multiple hypothesis testing and false-discovery-rate methods for gene expression data. |
|
10) |
Protein Folding Problem: Simulated Annealing Algorithms |
|
11) |
Threading, Homology Modeling for Protein Folding Problem |
|
12) |
Protein-protein and protein/DNA interactions, Gene/Protein networks, pathways |
|
13) |
Construction and analysis of large scale biological networks |
|
15) |
Final |
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16) |
Final |
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Program Outcomes |
Level of Contribution |
1) |
Adequate knowledge in mathematics, science and computer engineering; the ability to use theoretical and practical knowledge in these areas in complex engineering problems.
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2) |
Ability to identify, formulate, and solve complex engineering problems; ability to select and apply appropriate analysis and modeling methods for this purpose.
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3) |
Ability to design a complex system, process, device or product to meet specific requirements under realistic constraints and conditions; ability to apply modern design methods for this purpose.
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4) |
Ability to develop, select and use modern techniques and tools necessary for the analysis and solution of complex problems encountered in computer engineering applications; ability to use information technologies effectively.
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4 |
5) |
Ability to design, conduct experiments, collect data, analyze and interpret results for the study of complex engineering problems or computer engineering research topics.
|
4 |
6) |
Ability to work effectively within and multi-disciplinary teams; individual study skills.
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7) |
Ability to communicate effectively in verbal and written Turkish; knowledge of at least one foreign language; ability to write active reports and understand written reports, to prepare design and production reports, to make effective presentations, to give and receive clear and understandable instructions.
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8) |
Awareness of the necessity of lifelong learning; ability to access information, to follow developments in science and technology and to renew continuously.
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9) |
To act in accordance with ethical principles, professional and ethical responsibility; information on the standards used in engineering applications.
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10) |
Information on business practices such as project management, risk management and change management; awareness of entrepreneurship and innovation; information about sustainable development.
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11) |
Knowledge of the effects of engineering practices on health, environment and safety in the universal and social scale and the problems of the era reflected in engineering; awareness of the legal consequences of engineering solutions.
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