BIOENGINEERING (ENGLISH, THESIS)
Master	TR-NQF-HE: Level 7	QF-EHEA: Second Cycle	EQF-LLL: Level 7

Course Introduction and Application Information

Course Code	Course Name	Semester	Theoretical	Practical	Credit	ECTS
BNG5004	3D Modelling in Medicine	Fall Spring	3	0	3	12

This catalog is for information purposes. Course status is determined by the relevant department at the beginning of semester.

Basic information

Language of instruction:	English
Type of course:	Departmental Elective
Course Level:
Mode of Delivery:	Face to face
Course Coordinator :	Assist. Prof. BORA BÜYÜKSARAÇ
Course Objectives:	By the end of the course, students will be able to: 1. Understand the fundamentals of medical imaging and its role in 3D modeling. 2. Generate and manipulate 3D models using various software tools (e.g., 3D Slicer, Blender, MeshLab). 3. Apply 3D models for clinical applications such as surgery planning, disease simulation, and custom prosthetic design. 4. Analyze the accuracy and limitations of 3D models in medical applications. 5. Critically evaluate ethical and clinical considerations when applying 3D modeling in medicine.

Learning Outcomes

The students who have succeeded in this course;
By the end of the course, students will be able to:

1. Understand the principles of medical imaging and generate accurate 3D anatomical models from imaging data.
2. Create and manipulate anatomical models using 3D modeling software tools.
3. Apply 3D models effectively in clinical contexts such as surgical planning and patient-specific prosthetic or implant design.
4. Evaluate the accuracy, limitations, and clinical reliability of 3D models in medical applications.
5. Demonstrate awareness of ethical, privacy, and patient safety considerations in the use of 3D modeling technologies in medicine.

Course Content

This course introduces students to the principles and applications of 3D modeling in medicine. Students will learn how to generate 3D models from medical imaging data (e.g., CT, MRI, ultrasound), how to process and visualize complex anatomical structures, and how to apply 3D models to clinical practice, including surgical planning, prosthetics design, and personalized medicine. The course will involve both theoretical knowledge and practical experience with 3D modeling software, as well as discussions on ethical and clinical considerations.

Weekly Detailed Course Contents

Week	Subject	Related Preparation
1)	Introduction to 3D Modeling in Medicine
2)	Medical Imaging Basics
3)	Image Segmentation and Preprocessing
4)	3D Reconstruction from Imaging Data
5)	Introduction to 3D Modeling Software
5)	Introduction to 3D Modeling Software
6)	Applications in Surgical Planning
7)	Prosthetics and Implant Design
8)	Virtual Reality (VR) and Augmented Reality (AR) in Medicine
9)	Advanced 3D Modeling Techniques
10)	3D Printing in Medicine
11)	Case Studies in 3D Modeling in Medicine
12)	Clinical Challenges and Limitations of 3D Models
13)	Ethical Considerations in 3D Modeling
14)	Final Project Work Session

Sources

Course Notes / Textbooks:	3D Printing in Medicine: A Practical Guide for Medical Professionals Frank J. Rybicki, Gerald T. Grant Springer (2017)
References:	3D Printing in Medicine: A Practical Guide for Medical Professionals Frank J. Rybicki, Gerald T. Grant Springer (2017)

Evaluation System

Semester Requirements	Number of Activities	Level of Contribution
Homework Assignments	1	% 10
Presentation	2	% 30
Project	2	% 40
Final	1	% 20
Total		% 100
PERCENTAGE OF SEMESTER WORK		% 40
PERCENTAGE OF FINAL WORK		% 60
Total		% 100

ECTS / Workload Table

Activities	Number of Activities	Duration (Hours)	Workload
Course Hours	14	3	42
Study Hours Out of Class	14	8	112
Presentations / Seminar	2	25	50
Project	2	35	70
Homework Assignments	1	14	14
Final	1	2	2
Total Workload			290

Contribution of Learning Outcomes to Programme Outcomes

No Effect	1 Lowest	2 Low	3 Average	4 High	5 Highest

	Program Outcomes	Level of Contribution
1)	Follows scientific literature, analyzes it critically and uses it effectively in solving engineering problems.
2)	Designs, plans, implements and manages original projects related to the bioengineering.
3)	Carries out studies related to the bioengineering independently, takes scientific responsibility and evaluates the results obtained from a critical point of view.
4)	Effectively presents the results of his/her research and projects in written, oral and visual form in accordance with academic standards.
5)	Conducts independent research on subjects requiring expertise in the field, develops original thought and transfers this knowledge to practice.
6)	Uses advanced theoretical and practical knowledge specific to the bioengineering field effectively.
7)	Acts in accordance with professional, scientific and ethical values; takes responsibility by considering the social, environmental and ethical impacts of bioengineering practices.