COMPUTER PROGRAMMING (TURKISH)
Associate	TR-NQF-HE: Level 5	QF-EHEA: Short Cycle	EQF-LLL: Level 5

Course Introduction and Application Information

Course Code	Course Name	Semester	Theoretical	Practical	Credit	ECTS
MBG2003	Computation for Biological Sciences I	Spring Fall	2	2	3	7

This catalog is for information purposes. Course status is determined by the relevant department at the beginning of semester.

Basic information

Language of instruction:	English
Type of course:	Non-Departmental Elective
Course Level:	Associate (Short Cycle)
Mode of Delivery:	Face to face
Course Coordinator :	Dr. Öğr. Üyesi ELIZABETH HEMOND
Course Lecturer(s):	Dr. Öğr. Üyesi SERKAN AYVAZ Prof. Dr. SÜREYYA AKYÜZ
Course Objectives:	This class intended to provide a general introduction to computational tools for biology.

Learning Outcomes

The students who have succeeded in this course;
1. Have learned important biological data sources.
2. Can evaluate the results of biological analysis statistically and mathematically.
3. Have learned how to use various tools to evaluate genome sequencing data.
4. Have learned basic level analyses in Matlab.

Course Content

Evaluation and analysis of general biological and genome sequencing data using related computational tools efficiently.

Weekly Detailed Course Contents

Week	Subject	Related Preparation
1)	Biological data
2)	Biyological databases
3)	Sequencing data
4)	Sequence alignment
5)	Genome sequencing data
6)	Genome assembly
7)	Genetic variation analysis I
8)	Genetic variation analysis II
9)	Gene expression analysis
10)	Microarray data analysis
11)	Mass Spec analysis
12)	Molecular modelling I
13)	Molecular modelling II
14)	Molecular modelling III

Sources

Course Notes / Textbooks:	Ders notları verilecektir. Course notes will be supplied.
References:	Computational Biology Series Editors: Dress, A., Linial, M., Troyanskaya, O., Vingron, M. ISSN: 1568-2684, 2009

Evaluation System

Semester Requirements	Number of Activities	Level of Contribution
Attendance	10	% 10
Presentation	1	% 15
Midterms	1	% 25
Final	1	% 50
Total		% 100
PERCENTAGE OF SEMESTER WORK		% 50
PERCENTAGE OF FINAL WORK		% 50
Total		% 100

ECTS / Workload Table

Activities	Number of Activities	Duration (Hours)	Workload
Course Hours	14	4	56
Study Hours Out of Class	14	7	98
Presentations / Seminar	5	4	20
Midterms	1	2	2
Final	1	2	2
Total Workload			178

Contribution of Learning Outcomes to Programme Outcomes

No Effect	1 Lowest	2 Low	3 Average	4 High	5 Highest

	Program Outcomes	Level of Contribution
1)	Students will have knowledge of fundemantals of mathemetaics and phsics
2)	Students will have konowledge of relevant software and hardware requirements in the office environment
3)	Having the ability to define and explain the fundemental concepts, principles and essentilas of software and having the ability to develop software.
4)	Having the ability to use tools, machines and having the ability to recognize and diagnose problems in the related computer fields.
5)	Having the ability to communicate efficiently in verbal and written Turkish, to know at least one foreign language in order to communicate with the colleagues and customers.
6)	Having the ability to setup,diagnose and maintanance of databases
7)	Having the ability to design graphical animations for desktop applications and internet programming.
8)	Having the ability to develop and control internet projects
9)	Having the ability to develop group projects, team work, software and hardware projects
10)	Having the ability to set up,diagnose operating systems and network systems