MATHEMATICS (TURKISH, PHD) | |||||
PhD | TR-NQF-HE: Level 8 | QF-EHEA: Third Cycle | EQF-LLL: Level 8 |
Course Code | Course Name | Semester | Theoretical | Practical | Credit | ECTS |
BNG5124 | Basic Techniques in Bioengineering | Fall | 3 | 0 | 3 | 8 |
The course opens with the approval of the Department at the beginning of each semester |
Language of instruction: | En |
Type of course: | Departmental Elective |
Course Level: | |
Mode of Delivery: | Face to face |
Course Coordinator : | Prof. Dr. GÜLAY BULUT |
Course Objectives: | The aim of this course is to form a substantial theoretical basis to understand key experimental techniques used in modern bioengineering research. |
The students who have succeeded in this course; 1) Discuss the milestone experiments in bioengineering. 2) Learn the principles of related experiments. 3) Discuss application areas of related experiments by reading key articles. |
1) Primers and probes 2) Sequencing Technologies 3) SNP-analysis, methylation 4) RNA, RNA expression arrays, RT PCR, siRNA 5) Data mining 6) Proteomes, mass spectrometry 7) ELISA, cytotoxicity 8) Flow cytometry & phage antibody display I 9) Flow cytometry & phage antibody display II 10) Microscopy: Quantitative confocal microscopy 11) FRET, FRAP & computer modeling 12) Applied Molecular Imaging: MRI, CT, Nuclear, Optical in vivo 13) Bioreactors I 14) Bioreactors II |
Week | Subject | Related Preparation | |
1) | Primers and probes | ||
2) | Sequencing technologies | ||
3) | SNP-analysis, methylation | ||
4) | RNA, RNA expression arrays, RT PCR, siRNA | ||
5) | Data mining | ||
6) | Proteoms, mass spectrometry | ||
7) | ELISA, cytotoxicity | ||
8) | Flow cytometry & phage antibody display I | ||
9) | Flow cytometry & phage antibody display II | ||
10) | Microscopy: Quantitative confocal microscopy | ||
11) | FRET, FRAP and computer modeling | ||
12) | Applied Molecular Imaging: MRI, CT, Nuclear, Optical in vivo | ||
13) | Bioreactors I | ||
14) | Bioreactors II |
Course Notes: | 1. Current Protocols in Molecular Biology, Wiley Online Library, ISBN: 9780471142720 2. Lab Math, Dany Spencer Adams, CSHL Press, 2003, ISBN 0879696346, 9780879696344 3. Lab Ref, Albert S. Mellick, Linda Rodgers Cold Spring Harbor Laboratory Press, ISBN-13: 978-0879698157 4. Molecular Cloning: A Laboratory Manual, Joseph Sambrook, David William Russell, CSHL Press, 2001, ISBN 0879695773, 9780879695774 |
References: | Lecture notes. |
Semester Requirements | Number of Activities | Level of Contribution |
Attendance | 1 | % 10 |
Laboratory | 0 | % 0 |
Application | 0 | % 0 |
Field Work | 0 | % 0 |
Special Course Internship (Work Placement) | 0 | % 0 |
Quizzes | 0 | % 0 |
Homework Assignments | 0 | % 0 |
Presentation | 0 | % 0 |
Project | 0 | % 0 |
Seminar | 0 | % 0 |
Midterms | 1 | % 30 |
Preliminary Jury | 0 | % 0 |
Final | 1 | % 60 |
Paper Submission | 0 | % 0 |
Jury | 0 | % 0 |
Bütünleme | % 0 | |
Total | % 100 | |
PERCENTAGE OF SEMESTER WORK | % 40 | |
PERCENTAGE OF FINAL WORK | % 60 | |
Total | % 100 |
Activities | Number of Activities | Duration (Hours) | Workload |
Course Hours | 14 | 4 | 56 |
Laboratory | 0 | 0 | 0 |
Application | 0 | 0 | 0 |
Special Course Internship (Work Placement) | 0 | 0 | 0 |
Field Work | 0 | 0 | 0 |
Study Hours Out of Class | 14 | 7 | 98 |
Presentations / Seminar | 0 | 0 | 0 |
Project | 0 | 0 | 0 |
Homework Assignments | 0 | 0 | 0 |
Quizzes | 0 | 0 | 0 |
Preliminary Jury | 0 | 0 | 0 |
Midterms | 1 | 20 | 20 |
Paper Submission | 0 | 0 | 0 |
Jury | 0 | 0 | 0 |
Final | 1 | 30 | 30 |
Total Workload | 204 |
No Effect | 1 Lowest | 2 Low | 3 Average | 4 High | 5 Highest |
Program Outcomes | Level of Contribution |