| MATHEMATICS (TURKISH, PHD) | |||||
| PhD | TR-NQF-HE: Level 8 | QF-EHEA: Third Cycle | EQF-LLL: Level 8 | ||
| Course Code | Course Name | Semester | Theoretical | Practical | Credit | ECTS |
| MED3013 | Understanding of Bioinformatics | Fall | 2 | 0 | 2 | 2 |
| The course opens with the approval of the Department at the beginning of each semester |
| Language of instruction: | En |
| Type of course: | Departmental Elective |
| Course Level: | |
| Mode of Delivery: | Face to face |
| Course Coordinator : | Prof. Dr. SERDAR DURDAĞI |
| Course Lecturer(s): |
Prof. Dr. SERDAR DURDAĞI |
| Course Objectives: | Broad overview of bioinformatics with a significant problem-solving component, including hands-on practice using computational algorithms to solve a variety of biological problems (i.e., protein-ligand and protein-protein interactions) |
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The students who have succeeded in this course; At the end of the Course, students: -are expected to gain an understanding of the importance of bioinformatic approaches in modern biological research. -are expected to know and apply databanks used in bioinformatics. -are expected to use basic algorithms and softwares in bioinformatics field. -are expected to follow scientific articles at the field of bioinformatics. |
| -What is bioinformatics? -Alignment of pairs of sequences: Overview of methods -Alignment of pairs of sequences: Dynamic programming -Alignment of pairs of sequences: Substitution matrices and parameter choice -Statistical analysis of alignments: Overview of statistical issues -Multiple sequence alignment -Database searching: Overview of FASTA and BLAST -Predicting protein secondary structure -Predicting protein tertiary structure |
| Week | Subject | Related Preparation |
| Course Notes: | Bioinformatics in the Post-Genome Era, Jeff Augen 2005 Structural Bioinformatics: An Algorithm Approach, Forbes J. Burkowski, 2009 |
| References: |
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