| ECONOMICS | |||||
| Bachelor | TR-NQF-HE: Level 6 | QF-EHEA: First Cycle | EQF-LLL: Level 6 | ||
| Course Code | Course Name | Semester | Theoretical | Practical | Credit | ECTS |
| MBG4003 | Comparative Genomics and Proteomics | Fall | 2 | 0 | 2 | 5 |
| This catalog is for information purposes. Course status is determined by the relevant department at the beginning of semester. |
| Language of instruction: | English |
| Type of course: | Non-Departmental Elective |
| Course Level: | Bachelor’s Degree (First Cycle) |
| Mode of Delivery: | Face to face |
| Course Coordinator : | Assist. Prof. CEMALETTİN BEKPEN |
| Recommended Optional Program Components: | There is none. |
| Course Objectives: | The objective of this course is to provide information about the "omics" technology, especially focusing on genomics and proteomics. The recent applications of these areas and relevant bioinformatics background will be discussed. |
|
The students who have succeeded in this course; 1. Define the "omics" technologies. 2. Discuss the technologies behind genomics and proteomics studies. 3. Discuss the applications of both structural and functional genomics and also the proteomics studies. 4. Define basic information about bioinformatics. 5. Recognize the importance of these technologies in modern genetics. |
| Computational, molecular and genetic methodologies are covered including applications in structural and functional genomics (genome analysis and comparative genomics, technologies for transcriptional profiling), proteomics and related bioinformatics. |
| Week | Subject | Related Preparation |
| 1) | Introduction and definition of "omics" technology | Reading |
| 2) | Genomics, MetaGenomics | Reading |
| 3) | Functional Genomics | Reading |
| 4) | Comparative Genomics | Reading |
| 5) | Epigenomics | Reading |
| 6) | PaleoGenomics | Reading |
| 7) | Transcriptomics I | Reading |
| 8) | Transcriptomics II | Reading |
| 9) | Review for the midterm exam | Reading |
| 10) | Introduction to Proteomics "What is Proteomics" | Reading |
| 11) | Protein Separation and Sequencing | Reading |
| 12) | Protein Purification | Reading |
| 13) | Protein-Protein Interaction Y2H | Reading |
| 14) | Targeted Single Cell Proteomics | Reading |
| Course Notes / Textbooks: | Ders notları haftalık olarak verilecektir. Course notes will be supplied weekly. |
| References: | 1)Discovering genomics, proteomics and bioinformatics, Campbell AM and Heyer LJ, 2nd edition, 2007, Pearson education Inc., ISBN: 0-8053-8219-4 2)Bioinformatics and Functional genomics, Pevsner J, 2nd edition, 2009, John Wiley & Sons Inc., ISBN: 978-0-470-08585-1 3)Principles of gene manipulation and genomics, Primrose SB and Tywan RM, 7th edition, 2006, Blacwell Publishing, ISBN: 9781405135443" |
| Semester Requirements | Number of Activities | Level of Contribution |
| Attendance | 1 | % 5 |
| Quizzes | 1 | % 20 |
| Midterms | 1 | % 25 |
| Final | 1 | % 50 |
| Total | % 100 | |
| PERCENTAGE OF SEMESTER WORK | % 50 | |
| PERCENTAGE OF FINAL WORK | % 50 | |
| Total | % 100 | |
| Activities | Number of Activities | Duration (Hours) | Workload |
| Course Hours | 14 | 2 | 28 |
| Study Hours Out of Class | 14 | 3 | 42 |
| Homework Assignments | 1 | 20 | 20 |
| Quizzes | 4 | 4 | 16 |
| Midterms | 1 | 2 | 2 |
| Paper Submission | 1 | 10 | 10 |
| Final | 1 | 2 | 2 |
| Total Workload | 120 | ||
| No Effect | 1 Lowest | 2 Low | 3 Average | 4 High | 5 Highest |
| Program Outcomes | Level of Contribution | |
| 1) | As a world citizen, she is aware of global economic, political, social and ecological developments and trends. | 2 |
| 2) | He/she is equipped to closely follow the technological progress required by global and local dynamics and to continue learning. | 2 |
| 3) | Absorbs basic economic principles and analysis methods and uses them to evaluate daily events. | 2 |
| 4) | Uses quantitative and statistical tools to identify economic problems, analyze them, and share their findings with relevant stakeholders. | 2 |
| 5) | Understands the decision-making stages of economic units under existing constraints and incentives, examines the interactions and possible future effects of these decisions. | 1 |
| 6) | Comprehends new ways of doing business using digital technologies. and new market structures. | 2 |
| 7) | Takes critical approach to economic and social problems and develops analytical solutions. | 1 |
| 8) | Has the necessary mathematical equipment to produce analytical solutions and use quantitative research methods. | 2 |
| 9) | In the works he/she contributes, observes individual and social welfare together and with an ethical perspective. | 2 |
| 10) | Deals with economic problems with an interdisciplinary approach and seeks solutions by making use of different disciplines. | 1 |
| 11) | Generates original and innovative ideas in the works she/he contributes as part of a team. | 2 |