| OPERATING ROOM SERVICES (TURKISH) | |||||
| Associate | TR-NQF-HE: Level 5 | QF-EHEA: Short Cycle | EQF-LLL: Level 5 | ||
| Course Code | Course Name | Semester | Theoretical | Practical | Credit | ECTS |
| MBG2003 | Computation for Biological Sciences I | Fall | 2 | 2 | 3 | 7 |
| This catalog is for information purposes. Course status is determined by the relevant department at the beginning of semester. |
| Language of instruction: | English |
| Type of course: | Non-Departmental Elective |
| Course Level: | Associate (Short Cycle) |
| Mode of Delivery: | Face to face |
| Course Coordinator : | Dr. Öğr. Üyesi ELIZABETH HEMOND |
| Course Lecturer(s): |
Dr. Öğr. Üyesi SERKAN AYVAZ Prof. Dr. SÜREYYA AKYÜZ |
| Course Objectives: | This class intended to provide a general introduction to computational tools for biology. |
|
The students who have succeeded in this course; 1. Have learned important biological data sources. 2. Can evaluate the results of biological analysis statistically and mathematically. 3. Have learned how to use various tools to evaluate genome sequencing data. 4. Have learned basic level analyses in Matlab. |
| Evaluation and analysis of general biological and genome sequencing data using related computational tools efficiently. |
| Week | Subject | Related Preparation |
| 1) | Biological data | |
| 2) | Biyological databases | |
| 3) | Sequencing data | |
| 4) | Sequence alignment | |
| 5) | Genome sequencing data | |
| 6) | Genome assembly | |
| 7) | Genetic variation analysis I | |
| 8) | Genetic variation analysis II | |
| 9) | Gene expression analysis | |
| 10) | Microarray data analysis | |
| 11) | Mass Spec analysis | |
| 12) | Molecular modelling I | |
| 13) | Molecular modelling II | |
| 14) | Molecular modelling III |
| Course Notes / Textbooks: | Ders notları verilecektir. Course notes will be supplied. |
| References: | Computational Biology Series Editors: Dress, A., Linial, M., Troyanskaya, O., Vingron, M. ISSN: 1568-2684, 2009 |
| Semester Requirements | Number of Activities | Level of Contribution |
| Attendance | 10 | % 10 |
| Presentation | 1 | % 15 |
| Midterms | 1 | % 25 |
| Final | 1 | % 50 |
| Total | % 100 | |
| PERCENTAGE OF SEMESTER WORK | % 50 | |
| PERCENTAGE OF FINAL WORK | % 50 | |
| Total | % 100 | |
| Activities | Number of Activities | Duration (Hours) | Workload |
| Course Hours | 14 | 4 | 56 |
| Study Hours Out of Class | 14 | 7 | 98 |
| Presentations / Seminar | 5 | 4 | 20 |
| Midterms | 1 | 2 | 2 |
| Final | 1 | 2 | 2 |
| Total Workload | 178 | ||
| No Effect | 1 Lowest | 2 Low | 3 Average | 4 High | 5 Highest |
| Program Outcomes | Level of Contribution | |
| 1) | The use of theoretical knowledge in practice | |
| 2) | Effective use the terminology of the field | |
| 3) | Behave according to basic professional legislation related the field | |
| 4) | Use information and communication technology, express professional knowledge through written and verbal/non-verbal communication | |
| 5) | Express the social, scientific, cultural and ethical values of professional | |
| 6) | Behave according to quality management and processes and participate in these processes | |
| 7) | Develop themselves personally and professionally updating knowledge, skills and competencies of the field with lifelong learning awareness | |
| 8) | Use basic level knowledge and skills related the field, interpret and evaluate the data, identify potential problems and solve them | |
| 9) | Implement techniques according to developing technology and use new tools and devices | |
| 10) | The ability to prepare the operating room for surgery | |
| 11) | The ability to admit the patient into the operating room and to provide assistance for post - operational transport | |
| 12) | The ability to have theoretical and practical knowledge related to the field at a basic level |